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deoxynucleoside triphosphates  (New England Biolabs)


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    New England Biolabs deoxynucleoside triphosphates
    Deoxynucleoside Triphosphates, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 420 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/deoxynucleoside+triphosphates/NEBuffer+r2%2E1/pmc13127573-250-4-12
    Average 99 stars, based on 420 article reviews
    deoxynucleoside triphosphates - by Bioz Stars, 2026-09
    99/100 stars

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    Incubation:

    Article Title: Transcriptome and Methylome Profiling in Rat Skeletal Muscle: Impact of Post-Weaning Protein Restriction.
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mix was incubated at 37 ◦C for 2 h. The reaction was stopped by adding 0.1 mL of 0.5 M EDTA, and the labeled DNA was purified by isopropanol/ethanol precipitation. ..

    Article Title: Plant-associated fungi co-opt ancient antimicrobials for host manipulation
    Article Snippet: .. Then, 2.5 μl of deoxynucleoside triphosphates (10 mM each), 2 μl of NEBuffer r2.1 (10×, New England Biolabs, Ipswich, MA, USA; ref. B6002S), 0.5 μl of T4 DNA polymerase (New England Biolabs; ref. M0203S), and 5 μl nuclease-free water were added to the mixture, followed by an incubation at 12°C for 20 min. Products of this reaction were purified with a Monarch PCR and DNA Cleanup Kit (New England Biolabs; ref. T1030L). .. Concentration in DNA was then measured with a NanoDrop device.

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome
    Article Snippet: Four independent PCRs were performed on 2 μL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ~4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome.
    Article Snippet: Four independent PCRs were performed on 2 mL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ;4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Article Title: Postnatal nutrition environment reprograms renal DNA methylation patterns in offspring of maternal protein-restricted stroke-prone spontaneously hypertensive rats
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100 U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mixture was incubated at 37°C for 2 h. The reaction was stopped by adding 0.1 volume of 0.5 M ethylenediaminetetraacetic acid and the labeled DNA was purified by isopropanol/ethanol precipitation. .. Microarrays were hybridized at 42°C for 16–20 h with Cy3/5-labeled DNA in NimbleGen hybridization buffer/hybridization component A in a hybridization chamber (Hybridization System, NimbleGen Systems, Inc., Madison, WI, USA).

    Labeling:

    Article Title: Transcriptome and Methylome Profiling in Rat Skeletal Muscle: Impact of Post-Weaning Protein Restriction.
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mix was incubated at 37 ◦C for 2 h. The reaction was stopped by adding 0.1 mL of 0.5 M EDTA, and the labeled DNA was purified by isopropanol/ethanol precipitation. ..

    Article Title: Postnatal nutrition environment reprograms renal DNA methylation patterns in offspring of maternal protein-restricted stroke-prone spontaneously hypertensive rats
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100 U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mixture was incubated at 37°C for 2 h. The reaction was stopped by adding 0.1 volume of 0.5 M ethylenediaminetetraacetic acid and the labeled DNA was purified by isopropanol/ethanol precipitation. .. Microarrays were hybridized at 42°C for 16–20 h with Cy3/5-labeled DNA in NimbleGen hybridization buffer/hybridization component A in a hybridization chamber (Hybridization System, NimbleGen Systems, Inc., Madison, WI, USA).

    Purification:

    Article Title: Transcriptome and Methylome Profiling in Rat Skeletal Muscle: Impact of Post-Weaning Protein Restriction.
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mix was incubated at 37 ◦C for 2 h. The reaction was stopped by adding 0.1 mL of 0.5 M EDTA, and the labeled DNA was purified by isopropanol/ethanol precipitation. ..

    Article Title: Plant-associated fungi co-opt ancient antimicrobials for host manipulation
    Article Snippet: .. Then, 2.5 μl of deoxynucleoside triphosphates (10 mM each), 2 μl of NEBuffer r2.1 (10×, New England Biolabs, Ipswich, MA, USA; ref. B6002S), 0.5 μl of T4 DNA polymerase (New England Biolabs; ref. M0203S), and 5 μl nuclease-free water were added to the mixture, followed by an incubation at 12°C for 20 min. Products of this reaction were purified with a Monarch PCR and DNA Cleanup Kit (New England Biolabs; ref. T1030L). .. Concentration in DNA was then measured with a NanoDrop device.

    Article Title: Postnatal nutrition environment reprograms renal DNA methylation patterns in offspring of maternal protein-restricted stroke-prone spontaneously hypertensive rats
    Article Snippet: .. Then, 100 pmol of deoxynucleoside triphosphates and 100 U of the Klenow fragment (New England Biolabs, Ipswich, MA, USA) were added and the mixture was incubated at 37°C for 2 h. The reaction was stopped by adding 0.1 volume of 0.5 M ethylenediaminetetraacetic acid and the labeled DNA was purified by isopropanol/ethanol precipitation. .. Microarrays were hybridized at 42°C for 16–20 h with Cy3/5-labeled DNA in NimbleGen hybridization buffer/hybridization component A in a hybridization chamber (Hybridization System, NimbleGen Systems, Inc., Madison, WI, USA).

    Amplification:

    Article Title: Evidence that extra copies of chromosome 1q play a role in the early phases of pancreatic neoplasia
    Article Snippet: .. If 11 cycles were used, the libraries were divided into eight aliquots and amplified in eight 50-μl reactions, each supplemented with an additional 0.5 U of Q5 Hot Start High-Fidelity DNA Polymerase (New England Biolabs, M0493L), 1 μl of 10 mM deoxynucleoside triphosphates (Deoxynucleoside triphosphates; New England Biolabs, N0447L) and 0.4 μl of 25 mM MgCl 2 solution (New England Biolabs, B9021S). .. The products were purified with 1.8× SPRI beads (Beckman Coulter, B23317 ) and eluted in EB buffer (Qiagen).

    Polymerase Chain Reaction:

    Article Title: Plant-associated fungi co-opt ancient antimicrobials for host manipulation
    Article Snippet: .. Then, 2.5 μl of deoxynucleoside triphosphates (10 mM each), 2 μl of NEBuffer r2.1 (10×, New England Biolabs, Ipswich, MA, USA; ref. B6002S), 0.5 μl of T4 DNA polymerase (New England Biolabs; ref. M0203S), and 5 μl nuclease-free water were added to the mixture, followed by an incubation at 12°C for 20 min. Products of this reaction were purified with a Monarch PCR and DNA Cleanup Kit (New England Biolabs; ref. T1030L). .. Concentration in DNA was then measured with a NanoDrop device.

    SYBR Green Assay:

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome
    Article Snippet: Four independent PCRs were performed on 2 μL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ~4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome.
    Article Snippet: Four independent PCRs were performed on 2 mL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ;4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Detection Assay:

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome
    Article Snippet: Four independent PCRs were performed on 2 μL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ~4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome.
    Article Snippet: Four independent PCRs were performed on 2 mL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ;4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Staining:

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome
    Article Snippet: Four independent PCRs were performed on 2 μL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ~4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Article Title: Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome.
    Article Snippet: Four independent PCRs were performed on 2 mL of cDNA template using either AccuPrime Taq DNA polymerase (Thermo Fisher Scientific) or Phusion High Fidelity DNA polymerase (New England Biolabs, Ipswich, MA) to generate four overlapping ;4-kb amplicons across the genome. .. Amplicons were verified on 1% agarose gels, and excess primers and deoxynucleoside triphosphates were removed by treatment with Exonuclease I (New England Biolabs) and shrimp alkaline phosphatase (Affymetrix, Santa Clara, CA) for 37°C for 60 min, followed by incubation at 72°C for 15 min. Amplicons were quantitated using a SYBR green dsDNA detection assay (SYBR green I nucleic acid gel stain; Thermo Fisher Scientific), and all four amplicons per genome were pooled in equal concentrations. .. Samples were sequenced using both the MiSeq (Illumina) and Ion Torrent PGM (Thermo Fisher Scientific) to overcome platform-specific errors.

    Random Hexamer:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Virus:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Reverse Transcription:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Gene Expression:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Quantitative RT-PCR:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Real-time Polymerase Chain Reaction:

    Article Title: Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue
    Article Snippet: Gene expression levels were quantified by RSEM (version 1.3.0), and differential expression was analyzed by edgeR (version 3.30.3). . qRT-PCR Total RNA was purified from 2–5 × 10 5 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65°C, 0.5–1μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68°C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs; Ipswich, MA, USA) at 42°C for 1 h and then heat inactivated at 95°C for 5 min. Quantitative gene expression analyses were conducted by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems; Waltham, MA, USA) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..



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